[{"_1":2,"_38":-5,"_39":-5},"loaderData",{"_3":4,"_13":14},"root",{"_5":6,"_7":8,"_9":10,"_11":12},"isProduction",true,"domain","cran-e.com","version","2.11.0","nonce","ZDVhYTIzYTAtNjYzZS00MmE4LTkwY2EtOTA5NzZjMWE0ODFk","routes/_page.author.$authorName",{"_15":16,"_17":18,"_35":36,"_28":37},"authorName","Lakshman Abhilash","packages",[19],{"_20":21,"_30":31},"package",{"_22":23,"_24":25,"_26":27,"_28":29},"id",16172,"name","phase","title","Analyse Biological Time-Series Data","description","Compiles functions to trim, bin, visualise, and analyse activity/sleep time-series data collected from the Drosophila Activity Monitor (DAM) system (Trikinetics, USA). The following methods were used to compute periodograms - Chi-square periodogram: Sokolove and Bushell (1978) <[doi:10.1016/0022-5193(78)90022-X](https://doi.org/10.1016%2F0022-5193%2878%2990022-X)>, Lomb-Scargle periodogram: Lomb (1976) <[doi:10.1007/BF00648343](https://doi.org/10.1007%2FBF00648343)>, Scargle (1982) <[doi:10.1086/160554](https://doi.org/10.1086%2F160554)>, and Ruf (1999) <[doi:10.1076/brhm.30.2.178.1422](https://doi.org/10.1076%2Fbrhm.30.2.178.1422)>, and Autocorrelation: Eijzenbach et al. (1986) <[doi:10.1111/j.1440-1681.1986.tb00943.x](https://doi.org/10.1111%2Fj.1440-1681.1986.tb00943.x)>. Identification of activity peaks is done after using a Savitzky-Golay filter (Savitzky and Golay (1964) <[doi:10.1021/ac60214a047](https://doi.org/10.1021%2Fac60214a047)>) to smooth raw activity data. Three methods to estimate anticipation of activity are used based on the following papers - Slope method: Fernandez et al. (2020) <[doi:10.1016/j.cub.2020.04.025](https://doi.org/10.1016%2Fj.cub.2020.04.025)>, Harrisingh method: Harrisingh et al. (2007) <[doi:10.1523/JNEUROSCI.3680-07.2007](https://doi.org/10.1523%2FJNEUROSCI.3680-07.2007)>, and Stoleru method: Stoleru et al. (2004) <[doi:10.1038/nature02926](https://doi.org/10.1038%2Fnature02926)>. Rose plots and circular analysis are based on methods from - Batschelet (1981) and Zar (2010) .","roles",[32,33,34],"aut","cre","mnt","otherAuthors",[],"With 1 package under their belt, Lakshman Abhilash is just getting started. Great things often have humble beginnings! No other authors involved—Lakshman Abhilash likes to fly solo, and it shows in their work!","actionData","errors"]

Lakshman Abhilash

1 Package